J3_6YAL_003
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YAL_003 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.2048
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YAL|1|2|A|812
6YAL|1|2|G|813
6YAL|1|2|A|814
6YAL|1|2|G|815
*
6YAL|1|2|C|825
6YAL|1|2|A|826
6YAL|1|2|G|827
*
6YAL|1|2|C|839
6YAL|1|2|U|840
6YAL|1|2|G|841
6YAL|1|2|G|842
6YAL|1|2|A|843
6YAL|1|2|U|844
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein eS4
- Chain L
- 40S ribosomal protein uS4
- Chain a
- 40S ribosomal protein eS24
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