J3_6YAM_003

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YAM_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2048

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6YAM|1|2|A|812
6YAM|1|2|G|813
6YAM|1|2|A|814
6YAM|1|2|G|815
*
6YAM|1|2|C|825
6YAM|1|2|A|826
6YAM|1|2|G|827
*
6YAM|1|2|C|839
6YAM|1|2|U|840
6YAM|1|2|G|841
6YAM|1|2|G|842
6YAM|1|2|A|843
6YAM|1|2|U|844

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein eS4

Chain L

40S ribosomal protein uS4

Chain a

40S ribosomal protein eS24