J3_6YAM_006
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YAM_006 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1441
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YAM|1|2|C|1214
6YAM|1|2|C|1215
6YAM|1|2|A|1216
6YAM|1|2|G|1217
*
6YAM|1|2|C|1640
6YAM|1|2|C|1641
6YAM|1|2|A|1642
6YAM|1|2|G|1643
6YAM|1|2|U|1644
6YAM|1|2|A|1645
6YAM|1|2|A|1646
*
6YAM|1|2|U|1668
6YAM|1|2|G|1669
6YAM|1|2|A|1670
6YAM|1|2|U|1671
6YAM|1|2|U|1672
6YAM|1|2|A|1673
6YAM|1|2|A|1674
6YAM|1|2|G|1675
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- eukaryotic translation initiation factor 2 subunit alpha
- Chain H
- 40S ribosomal protein uS7
- Chain S
- 40S ribosomal protein uS9
- Chain d
- 40S ribosomal protein eS28
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