3D structure

PDB id
6YAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CCAG*CCAGUAA*UGAUUAAG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YAM_006 not in the Motif Atlas
Homologous match to J3_4V88_035
Geometric discrepancy: 0.1441
The information below is about J3_4V88_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.1
Basepair signature
cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6YAM|1|2|C|1214
6YAM|1|2|C|1215
6YAM|1|2|A|1216
6YAM|1|2|G|1217
*
6YAM|1|2|C|1640
6YAM|1|2|C|1641
6YAM|1|2|A|1642
6YAM|1|2|G|1643
6YAM|1|2|U|1644
6YAM|1|2|A|1645
6YAM|1|2|A|1646
*
6YAM|1|2|U|1668
6YAM|1|2|G|1669
6YAM|1|2|A|1670
6YAM|1|2|U|1671
6YAM|1|2|U|1672
6YAM|1|2|A|1673
6YAM|1|2|A|1674
6YAM|1|2|G|1675

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain A
eukaryotic translation initiation factor 2 subunit alpha
Chain H
40S ribosomal protein uS7
Chain S
40S ribosomal protein uS9
Chain d
40S ribosomal protein eS28

Coloring options:


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