J3_6YAM_009

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6YAM|1|2|G|1270, 6YAM|1|2|G|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YAM_009 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1534

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6YAM|1|2|C|1268
6YAM|1|2|C|1269
6YAM|1|2|G|1270
6YAM|1|2|G|1271
6YAM|1|2|A|1272
6YAM|1|2|C|1273
*
6YAM|1|2|G|1316
6YAM|1|2|G|1317
6YAM|1|2|G|1318
6YAM|1|2|U|1319
6YAM|1|2|G|1320
*
6YAM|1|2|U|1500
6YAM|1|2|U|1501
6YAM|1|2|A|1502
6YAM|1|2|G|1503
6YAM|1|2|A|1504
6YAM|1|2|U|1505
6YAM|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein eS10

Chain e

ribosomal protein uS14

Chain f

ribosomal protein eS31