J3_6YAN_008

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6YAN|1|2|G|1270, 6YAN|1|2|G|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YAN_008 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1874

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6YAN|1|2|C|1268
6YAN|1|2|C|1269
6YAN|1|2|G|1270
6YAN|1|2|G|1271
6YAN|1|2|A|1272
6YAN|1|2|C|1273
*
6YAN|1|2|G|1316
6YAN|1|2|G|1317
6YAN|1|2|G|1318
6YAN|1|2|U|1319
6YAN|1|2|G|1320
*
6YAN|1|2|U|1500
6YAN|1|2|U|1501
6YAN|1|2|A|1502
6YAN|1|2|G|1503
6YAN|1|2|A|1504
6YAN|1|2|U|1505
6YAN|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein eS10

Chain e

ribosomal protein uS14

Chain f

ribosomal protein eS31