J3_6YDP_010

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CCAAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YDP_010 not in the Motif Atlas

Geometric match to J3_8VTW_002

Geometric discrepancy: 0.1955

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6YDP|1|BA|C|266
6YDP|1|BA|A|267
6YDP|1|BA|G|268
*
6YDP|1|BA|C|279
6YDP|1|BA|C|280
6YDP|1|BA|A|281
6YDP|1|BA|A|282
6YDP|1|BA|C|283
*
6YDP|1|BA|G|307
6YDP|1|BA|A|308
6YDP|1|BA|A|309
6YDP|1|BA|G|310

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BD

uL2m

Chain Ba

Mitochondrial ribosomal protein L37