J3_6YDP_015

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACC*GCAGUAA*UGAAUAAG

Length

19 nucleotides

Bulged bases

6YDP|1|AA|A|822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YDP_015 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.4641

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6YDP|1|AA|C|542
6YDP|1|AA|A|543
6YDP|1|AA|C|544
6YDP|1|AA|C|545
*
6YDP|1|AA|G|788
6YDP|1|AA|C|789
6YDP|1|AA|A|790
6YDP|1|AA|G|791
6YDP|1|AA|U|792
6YDP|1|AA|A|793
6YDP|1|AA|A|794
*
6YDP|1|AA|U|816
6YDP|1|AA|G|817
6YDP|1|AA|A|818
6YDP|1|AA|A|819
6YDP|1|AA|U|820
6YDP|1|AA|A|821
6YDP|1|AA|A|822
6YDP|1|AA|G|823

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AI

uS9m

Chain Am

mS37