J3_6YEF_026
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6YEF|1|A|U|549, 6YEF|1|A|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YEF_026 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.1318
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6YEF|1|A|G|30
6YEF|1|A|C|31
*
6YEF|1|A|G|520
6YEF|1|A|U|521
6YEF|1|A|G|522
6YEF|1|A|A|523
6YEF|1|A|A|524
6YEF|1|A|A|525
6YEF|1|A|A|526
6YEF|1|A|G|527
6YEF|1|A|C|528
6YEF|1|A|A|529
6YEF|1|A|C|530
*
6YEF|1|A|G|541
6YEF|1|A|A|542
6YEF|1|A|G|543
6YEF|1|A|U|544
6YEF|1|A|G|545
6YEF|1|A|A|546
6YEF|1|A|A|547
6YEF|1|A|A|548
6YEF|1|A|U|549
6YEF|1|A|A|550
6YEF|1|A|G|551
6YEF|1|A|A|552
6YEF|1|A|A|553
6YEF|1|A|C|554
6YEF|1|A|C|555
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain T
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L24
Coloring options: