J3_6YEF_029

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

6YEF|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YEF_029 not in the Motif Atlas

Homologous match to J3_4WF9_016

Geometric discrepancy: 0.1321

The information below is about J3_4WF9_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

6YEF|1|A|U|1381
6YEF|1|A|C|1382
6YEF|1|A|G|1383
6YEF|1|A|G|1384
6YEF|1|A|G|1385
6YEF|1|A|U|1386
6YEF|1|A|C|1387
*
6YEF|1|A|G|1418
6YEF|1|A|A|1419
6YEF|1|A|U|1420
6YEF|1|A|A|1421
6YEF|1|A|A|1422
*
6YEF|1|A|U|1439
6YEF|1|A|A|1440

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23