J3_6YHS_005

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YHS_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1504

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6YHS|1|1|C|1286
6YHS|1|1|G|1287
6YHS|1|1|A|1288
6YHS|1|1|A|1289
6YHS|1|1|A|1290
6YHS|1|1|G|1291
*
6YHS|1|1|C|1616
6YHS|1|1|A|1617
6YHS|1|1|G|1618
*
6YHS|1|1|C|1630
6YHS|1|1|A|1631
6YHS|1|1|A|1632
6YHS|1|1|G|1633

Current chains

Chain 1

23S ribosomal RNA

Nearby chains