J3_6YHS_010
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6YHS|1|1|A|2323, 6YHS|1|1|A|2325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YHS_010 not in the Motif Atlas
- Homologous match to J3_5J7L_045
- Geometric discrepancy: 0.2086
- The information below is about J3_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YHS|1|1|C|2284
6YHS|1|1|U|2285
6YHS|1|1|C|2286
*
6YHS|1|1|G|2310
6YHS|1|1|A|2311
6YHS|1|1|G|2312
*
6YHS|1|1|C|2321
6YHS|1|1|A|2322
6YHS|1|1|A|2323
6YHS|1|1|A|2324
6YHS|1|1|A|2325
6YHS|1|1|G|2326
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain K
- 50S ribosomal protein L18
- Chain S
- 50S ribosomal protein L27
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