J3_6YHS_015
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAUAGAUCC
- Length
- 28 nucleotides
- Bulged bases
- 6YHS|1|1|U|496, 6YHS|1|1|U|500
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YHS_015 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1377
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6YHS|1|1|G|30
6YHS|1|1|C|31
*
6YHS|1|1|G|466
6YHS|1|1|C|467
6YHS|1|1|G|468
6YHS|1|1|A|469
6YHS|1|1|A|470
6YHS|1|1|A|471
6YHS|1|1|A|472
6YHS|1|1|G|473
6YHS|1|1|A|474
6YHS|1|1|A|475
6YHS|1|1|C|476
*
6YHS|1|1|G|488
6YHS|1|1|A|489
6YHS|1|1|G|490
6YHS|1|1|U|491
6YHS|1|1|G|492
6YHS|1|1|A|493
6YHS|1|1|A|494
6YHS|1|1|A|495
6YHS|1|1|U|496
6YHS|1|1|A|497
6YHS|1|1|G|498
6YHS|1|1|A|499
6YHS|1|1|U|500
6YHS|1|1|C|501
6YHS|1|1|C|502
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L22
- Chain Q
- 50S ribosomal protein L24
Coloring options: