J3_6YLG_017

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

6YLG|1|3|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YLG_017 not in the Motif Atlas

Homologous match to J3_5TBW_045

Geometric discrepancy: 0.11

The information below is about J3_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52398.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6YLG|1|3|C|9
6YLG|1|3|C|10
6YLG|1|3|A|11
6YLG|1|3|U|12
6YLG|1|3|A|13
6YLG|1|3|U|14
*
6YLG|1|3|A|66
6YLG|1|3|G|67
*
6YLG|1|3|U|111
6YLG|1|3|G|112

Current chains

Chain 3

5S rRNA

Nearby chains

Chain 5

rRNA-processing protein CGR1

Chain D

60S ribosomal protein L5

Chain T

60S ribosomal protein L21-A