J3_6YLX_014
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6YLX|1|2|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YLX_014 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1547
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6YLX|1|2|A|44
6YLX|1|2|C|45
*
6YLX|1|2|G|58
6YLX|1|2|A|59
6YLX|1|2|U|60
6YLX|1|2|A|61
6YLX|1|2|C|62
6YLX|1|2|G|63
6YLX|1|2|U|64
*
6YLX|1|2|A|96
6YLX|1|2|A|97
6YLX|1|2|U|98
6YLX|1|2|C|99
6YLX|1|2|U|100
Current chains
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: