J3_6YPU_002
3D structure
- PDB id
- 6YPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YPU_002 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.1104
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YPU|1|2|C|583
6YPU|1|2|G|584
6YPU|1|2|G|585
*
6YPU|1|2|C|648
6YPU|1|2|U|649
6YPU|1|2|A|650
6YPU|1|2|G|651
6YPU|1|2|A|652
*
6YPU|1|2|U|748
6YPU|1|2|G|749
6YPU|1|2|A|750
6YPU|1|2|C|751
6YPU|1|2|G|752
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S8
- Chain m
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S17
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