J3_6YS3_013
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6YS3|1|b|A|504, 6YS3|1|b|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YS3_013 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1278
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YS3|1|b|G|30
6YS3|1|b|C|31
*
6YS3|1|b|G|474
6YS3|1|b|C|475
6YS3|1|b|G|476
6YS3|1|b|A|477
6YS3|1|b|A|478
6YS3|1|b|A|479
6YS3|1|b|A|480
6YS3|1|b|G|481
6YS3|1|b|A|482
6YS3|1|b|A|483
6YS3|1|b|C|484
*
6YS3|1|b|G|496
6YS3|1|b|A|497
6YS3|1|b|G|498
6YS3|1|b|U|499
6YS3|1|b|G|500
6YS3|1|b|A|501
6YS3|1|b|A|502
6YS3|1|b|A|503
6YS3|1|b|A|504
6YS3|1|b|A|505
6YS3|1|b|G|506
6YS3|1|b|A|507
6YS3|1|b|A|508
6YS3|1|b|C|509
6YS3|1|b|C|510
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain q
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L22
- Chain u
- 50S ribosomal protein L24
- Chain z
- Gamma-crystallin B
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