J3_6YS3_017

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YS3_017 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0683

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6YS3|1|b|G|1426
6YS3|1|b|G|1427
6YS3|1|b|G|1428
6YS3|1|b|A|1429
6YS3|1|b|C|1430
6YS3|1|b|G|1431
*
6YS3|1|b|C|1566
6YS3|1|b|C|1567
*
6YS3|1|b|G|1570
6YS3|1|b|A|1571
6YS3|1|b|A|1572
6YS3|1|b|A|1573
6YS3|1|b|A|1574
6YS3|1|b|G|1575
6YS3|1|b|C|1576

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2