J3_6YSI_016
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6YSI|1|1|U|34, 6YSI|1|1|U|440, 6YSI|1|1|C|448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YSI_016 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0946
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6YSI|1|1|C|32
6YSI|1|1|U|33
6YSI|1|1|U|34
6YSI|1|1|G|35
*
6YSI|1|1|C|437
6YSI|1|1|G|438
6YSI|1|1|A|439
6YSI|1|1|U|440
6YSI|1|1|A|441
6YSI|1|1|G|442
6YSI|1|1|U|443
6YSI|1|1|G|444
6YSI|1|1|A|445
6YSI|1|1|A|446
6YSI|1|1|C|447
6YSI|1|1|C|448
6YSI|1|1|A|449
6YSI|1|1|G|450
6YSI|1|1|U|451
6YSI|1|1|A|452
6YSI|1|1|C|453
*
6YSI|1|1|G|460
6YSI|1|1|G|461
6YSI|1|1|A|462
6YSI|1|1|A|463
6YSI|1|1|A|464
6YSI|1|1|G|465
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L23
- Chain Z
- 50S ribosomal protein L34
Coloring options: