3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6YST|1|A|A|504, 6YST|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YST_026 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1237
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6YST|1|A|G|30
6YST|1|A|C|31
*
6YST|1|A|G|474
6YST|1|A|C|475
6YST|1|A|G|476
6YST|1|A|A|477
6YST|1|A|A|478
6YST|1|A|A|479
6YST|1|A|A|480
6YST|1|A|G|481
6YST|1|A|A|482
6YST|1|A|A|483
6YST|1|A|C|484
*
6YST|1|A|G|496
6YST|1|A|A|497
6YST|1|A|G|498
6YST|1|A|U|499
6YST|1|A|G|500
6YST|1|A|A|501
6YST|1|A|A|502
6YST|1|A|A|503
6YST|1|A|A|504
6YST|1|A|A|505
6YST|1|A|G|506
6YST|1|A|A|507
6YST|1|A|A|508
6YST|1|A|C|509
6YST|1|A|C|510

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.7071 s