J3_6YST_030

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YST_030 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.087

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6YST|1|A|G|1424
6YST|1|A|G|1425
6YST|1|A|G|1426
6YST|1|A|A|1427
6YST|1|A|C|1428
6YST|1|A|G|1429
*
6YST|1|A|C|1564
6YST|1|A|C|1565
*
6YST|1|A|G|1568
6YST|1|A|A|1569
6YST|1|A|A|1570
6YST|1|A|A|1571
6YST|1|A|A|1572
6YST|1|A|G|1573
6YST|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2