J3_6YSU_006

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YSU_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1283

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6YSU|1|A|C|1298
6YSU|1|A|G|1299
6YSU|1|A|G|1300
6YSU|1|A|A|1301
6YSU|1|A|A|1302
6YSU|1|A|G|1303
*
6YSU|1|A|C|1625
6YSU|1|A|A|1626
6YSU|1|A|G|1627
*
6YSU|1|A|C|1639
6YSU|1|A|A|1640
6YSU|1|A|A|1641
6YSU|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains