J3_6YTF_006

3D structure

PDB id

6YTF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YTF_006 not in the Motif Atlas

Geometric match to J3_4LFB_017

Geometric discrepancy: 0.1662

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6YTF|1|3|U|1070
6YTF|1|3|G|1071
*
6YTF|1|3|U|1080
6YTF|1|3|G|1081
6YTF|1|3|U|1082
6YTF|1|3|U|1083
*
6YTF|1|3|G|1096
6YTF|1|3|C|1097
6YTF|1|3|A|1098
6YTF|1|3|A|1099

Current chains

Chain 3

16S ribosomal RNA

Nearby chains