J3_6YTF_008
3D structure
- PDB id
- 6YTF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 6YTF|1|3|U|1237, 6YTF|1|3|C|1299
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YTF_008 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1742
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
6YTF|1|3|C|1234
6YTF|1|3|A|1235
6YTF|1|3|A|1236
6YTF|1|3|U|1237
6YTF|1|3|G|1238
*
6YTF|1|3|C|1293
6YTF|1|3|G|1294
6YTF|1|3|U|1295
6YTF|1|3|A|1296
6YTF|1|3|G|1297
6YTF|1|3|U|1298
6YTF|1|3|C|1299
6YTF|1|3|C|1300
*
6YTF|1|3|G|1331
6YTF|1|3|U|1332
6YTF|1|3|C|1333
6YTF|1|3|G|1334
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S7
- Chain n
- 30S ribosomal protein S13
Coloring options: