J3_6Z1P_038

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAGG*CUUAGUUC*GAUG

Length

17 nucleotides

Bulged bases

6Z1P|1|Bb|G|1252, 6Z1P|1|Bb|U|1313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z1P_038 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1635

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6Z1P|1|Bb|C|1249
6Z1P|1|Bb|A|1250
6Z1P|1|Bb|A|1251
6Z1P|1|Bb|G|1252
6Z1P|1|Bb|G|1253
*
6Z1P|1|Bb|C|1307
6Z1P|1|Bb|U|1308
6Z1P|1|Bb|U|1309
6Z1P|1|Bb|A|1310
6Z1P|1|Bb|G|1311
6Z1P|1|Bb|U|1312
6Z1P|1|Bb|U|1313
6Z1P|1|Bb|C|1314
*
6Z1P|1|Bb|G|1345
6Z1P|1|Bb|A|1346
6Z1P|1|Bb|U|1347
6Z1P|1|Bb|G|1348

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BF

mS75

Chain Bh

Ymf63

Chain Bm

Ribosomal protein S13