J3_6Z1P_043

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGA*UAC*GAAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z1P_043 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1679

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6Z1P|1|Bb|U|921
6Z1P|1|Bb|G|922
6Z1P|1|Bb|G|923
6Z1P|1|Bb|A|924
*
6Z1P|1|Bb|U|1247
6Z1P|1|Bb|A|1248
6Z1P|1|Bb|C|1249
*
6Z1P|1|Bb|G|1348
6Z1P|1|Bb|A|1349
6Z1P|1|Bb|A|1350
6Z1P|1|Bb|A|1351

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BF

mS75

Chain Bi

Ribosomal protein S9

Chain Bm

Ribosomal protein S13