J3_6Z6J_008

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

6Z6J|1|C1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6J_008 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1019

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6Z6J|1|C1|U|1479
6Z6J|1|C1|G|1480
6Z6J|1|C1|A|1481
6Z6J|1|C1|A|1482
6Z6J|1|C1|G|1483
6Z6J|1|C1|U|1484
6Z6J|1|C1|G|1485
*
6Z6J|1|C1|C|1857
6Z6J|1|C1|A|1858
6Z6J|1|C1|A|1859
*
6Z6J|1|C1|U|1871
6Z6J|1|C1|C|1872
6Z6J|1|C1|U|1873
6Z6J|1|C1|A|1874

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain Lg

60S ribosomal protein L34-A