J3_6Z6K_025

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGAC*GGGUG*UUAGACG

Length

17 nucleotides

Bulged bases

6Z6K|1|C2|A|1217, 6Z6K|1|C2|G|1445, 6Z6K|1|C2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6K_025 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.5174

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6Z6K|1|C2|C|1216
6Z6K|1|C2|A|1217
6Z6K|1|C2|G|1218
6Z6K|1|C2|A|1219
6Z6K|1|C2|C|1220
*
6Z6K|1|C2|G|1263
6Z6K|1|C2|G|1264
6Z6K|1|C2|G|1265
6Z6K|1|C2|U|1266
6Z6K|1|C2|G|1267
*
6Z6K|1|C2|U|1442
6Z6K|1|C2|U|1443
6Z6K|1|C2|A|1444
6Z6K|1|C2|G|1445
6Z6K|1|C2|A|1446
6Z6K|1|C2|C|1447
6Z6K|1|C2|G|1448

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10-A

Chain Sd

40S ribosomal protein S29-A