J3_6Z6K_032

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

6Z6K|1|C1|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6K_032 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.1136

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75408.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6Z6K|1|C1|C|185
6Z6K|1|C1|U|186
6Z6K|1|C1|A|187
6Z6K|1|C1|U|188
6Z6K|1|C1|G|189
*
6Z6K|1|C1|C|205
6Z6K|1|C1|G|206
6Z6K|1|C1|U|207
6Z6K|1|C1|C|208
6Z6K|1|C1|A|209
6Z6K|1|C1|U|210
6Z6K|1|C1|A|211
6Z6K|1|C1|G|212
6Z6K|1|C1|A|213
6Z6K|1|C1|G|214
*
6Z6K|1|C1|C|226
6Z6K|1|C1|G|227
6Z6K|1|C1|U|228
6Z6K|1|C1|G|229
6Z6K|1|C1|U|230
6Z6K|1|C1|G|231

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A