3D structure

PDB id
6Z6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of human CCDC124 bound to 80S ribosomes
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CCAG*CCAGUAA*UGAUUAAG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Z6L_022 not in the Motif Atlas
Homologous match to J3_4V88_035
Geometric discrepancy: 0.1225
The information below is about J3_4V88_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.1
Basepair signature
cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6Z6L|1|S2|C|1218
6Z6L|1|S2|C|1219
6Z6L|1|S2|A|1220
6Z6L|1|S2|G|1221
*
6Z6L|1|S2|C|1645
6Z6L|1|S2|C|1646
6Z6L|1|S2|A|1647
6Z6L|1|S2|G|1648
6Z6L|1|S2|U|1649
6Z6L|1|S2|A|1650
6Z6L|1|S2|A|1651
*
6Z6L|1|S2|U|1673
6Z6L|1|S2|G|1674
6Z6L|1|S2|A|1675
6Z6L|1|S2|U|1676
6Z6L|1|S2|U|1677
6Z6L|1|S2|A|1678
6Z6L|1|S2|A|1679
6Z6L|1|S2|G|1680

Current chains

Chain S2
18S rRNA

Nearby chains

Chain CC
Transfer RNA; tRNA
Chain SF
40S ribosomal protein S5
Chain SQ
40S ribosomal protein S16
Chain SR
40S ribosomal protein S17
Chain Sc
40S ribosomal protein S28

Coloring options:


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