J3_6Z6M_008

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

6Z6M|1|L5|U|2788, 6Z6M|1|L5|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6M_008 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.083

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6Z6M|1|L5|G|2402
6Z6M|1|L5|A|2403
6Z6M|1|L5|A|2404
6Z6M|1|L5|G|2405
*
6Z6M|1|L5|C|2785
6Z6M|1|L5|C|2786
6Z6M|1|L5|A|2787
6Z6M|1|L5|U|2788
6Z6M|1|L5|A|2789
6Z6M|1|L5|U|2790
6Z6M|1|L5|C|2791
*
6Z6M|1|L5|G|2800
6Z6M|1|L5|U|2801
6Z6M|1|L5|C|2802

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39