J3_6ZCE_010
3D structure
- PDB id
- 6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast ABCE1-bound 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 6ZCE|1|A|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZCE_010 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1285
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6ZCE|1|A|U|1283
6ZCE|1|A|C|1284
6ZCE|1|A|U|1285
6ZCE|1|A|U|1286
6ZCE|1|A|A|1287
6ZCE|1|A|G|1288
*
6ZCE|1|A|C|1327
6ZCE|1|A|G|1328
6ZCE|1|A|A|1329
6ZCE|1|A|G|1330
6ZCE|1|A|A|1331
6ZCE|1|A|C|1332
*
6ZCE|1|A|G|1419
6ZCE|1|A|C|1420
6ZCE|1|A|A|1421
6ZCE|1|A|A|1422
6ZCE|1|A|U|1423
6ZCE|1|A|A|1424
Current chains
- Chain A
- 18S ribosomal RNA (1719-MER)
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain E
- 40S ribosomal protein S3
- Chain R
- 40S ribosomal protein S16-A
- Chain S
- 40S ribosomal protein S17-A
- Chain V
- 40S ribosomal protein S20
- Chain e
- 40S ribosomal protein S29-A
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