J3_6ZCE_011

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZCE_011 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.128

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6ZCE|1|A|U|1293
6ZCE|1|A|G|1294
*
6ZCE|1|A|U|1303
6ZCE|1|A|G|1304
6ZCE|1|A|U|1305
6ZCE|1|A|C|1306
*
6ZCE|1|A|G|1318
6ZCE|1|A|A|1319
6ZCE|1|A|U|1320
6ZCE|1|A|A|1321
6ZCE|1|A|A|1322

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain B

40S ribosomal protein S0-A

Chain D

40S ribosomal protein S2

Chain S

40S ribosomal protein S17-A