J3_6ZCE_013

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

6ZCE|1|A|U|1473, 6ZCE|1|A|C|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZCE_013 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.1568

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6ZCE|1|A|C|1470
6ZCE|1|A|A|1471
6ZCE|1|A|C|1472
6ZCE|1|A|U|1473
6ZCE|1|A|G|1474
*
6ZCE|1|A|C|1533
6ZCE|1|A|G|1534
6ZCE|1|A|U|1535
6ZCE|1|A|G|1536
6ZCE|1|A|C|1537
6ZCE|1|A|U|1538
6ZCE|1|A|G|1539
6ZCE|1|A|G|1540
*
6ZCE|1|A|C|1571
6ZCE|1|A|G|1572
6ZCE|1|A|A|1573
6ZCE|1|A|G|1574

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain G

40S ribosomal protein S5

Chain T

40S ribosomal protein S18-A

Chain a

40S ribosomal protein S25-A