J3_6ZJ3_003
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGAAC(PSU)A*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 6ZJ3|1|LE|A|1116, 6ZJ3|1|LE|C|1117, 6ZJ3|1|LE|G|1224
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_003 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.339
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZJ3|1|LE|U|1113
6ZJ3|1|LE|G|1114
6ZJ3|1|LE|A|1115
6ZJ3|1|LE|A|1116
6ZJ3|1|LE|C|1117
6ZJ3|1|LE|PSU|1118
6ZJ3|1|LE|A|1119
*
6ZJ3|1|LE|U|1205
6ZJ3|1|LE|A|1206
6ZJ3|1|LE|G|1207
*
6ZJ3|1|LE|C|1223
6ZJ3|1|LE|G|1224
6ZJ3|1|LE|A|1225
6ZJ3|1|LE|G|1226
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain Lb
- Ribosomal protein eL15
- Chain Ly
- Ribosomal protein eL37
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