J3_6ZJ3_006
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GCAG*UGCAUCAC*GUC
- Length
- 15 nucleotides
- Bulged bases
- 6ZJ3|1|LH|U|2297, 6ZJ3|1|LH|C|2298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_006 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.1609
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZJ3|1|LF|G|1902
6ZJ3|1|LF|C|1903
6ZJ3|1|LF|A|1904
6ZJ3|1|LF|G|1905
*
6ZJ3|1|LH|U|2293
6ZJ3|1|LH|G|2294
6ZJ3|1|LH|C|2295
6ZJ3|1|LH|A|2296
6ZJ3|1|LH|U|2297
6ZJ3|1|LH|C|2298
6ZJ3|1|LH|A|2299
6ZJ3|1|LH|C|2300
*
6ZJ3|1|LH|G|2309
6ZJ3|1|LH|U|2310
6ZJ3|1|LH|C|2311
Current chains
- Chain LF
- LSU rRNA chain 5
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- LSU rRNA chain 6
- Chain Lw
- Ribosomal protein eL34
- Chain Ly
- Ribosomal protein eL37
Coloring options: