J3_6ZJ3_016
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|LO|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_016 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.1416
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ZJ3|1|LO|C|9
6ZJ3|1|LO|C|10
6ZJ3|1|LO|A|11
6ZJ3|1|LO|U|12
6ZJ3|1|LO|A|13
6ZJ3|1|LO|C|14
*
6ZJ3|1|LO|G|65
6ZJ3|1|LO|G|66
*
6ZJ3|1|LO|U|109
6ZJ3|1|LO|G|110
Current chains
- Chain LO
- 5S rRNA
Nearby chains
- Chain L6
- Ribosomal protein eLEgr2
- Chain L7
- Ribosomal protein eLEgr3
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Ld
- Ribosomal protein uL18
- Chain Lh
- Ribosomal protein eL21
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