J3_6ZJ3_024
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGGA*UAC*G(7MG)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_024 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0794
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ZJ3|1|S1|U|1578
6ZJ3|1|S1|G|1579
6ZJ3|1|S1|G|1580
6ZJ3|1|S1|A|1581
*
6ZJ3|1|S1|U|1953
6ZJ3|1|S1|A|1954
6ZJ3|1|S1|C|1955
*
6ZJ3|1|S1|G|2077
6ZJ3|1|S1|7MG|2078
6ZJ3|1|S1|A|2079
6ZJ3|1|S1|A|2080
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain S3
- Transfer RNA; tRNA
- Chain S4
- Transfer RNA; tRNA
- Chain SH
- Ribosomal protein uS7
- Chain SL
- Ribosomal protein uS9
- Chain SR
- Ribosomal protein uS13
- Chain SX
- Ribosomal protein eS19
- Chain Sa
- Ribosomal protein eS25
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