J3_6ZJ3_037
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UAGC*GU(PSU)*A(5MC)CA(A2M)CA
- Length
- 14 nucleotides
- Bulged bases
- 6ZJ3|1|LI|A|3473, 6ZJ3|1|LI|G|3474
- QA status
- Modified nucleotides: PSU, 5MC, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_037 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.1838
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|LI|U|3472
6ZJ3|1|LI|A|3473
6ZJ3|1|LI|G|3474
6ZJ3|1|LI|C|3475
*
6ZJ3|1|LI|G|3501
6ZJ3|1|LI|U|3502
6ZJ3|1|LI|PSU|3503
*
6ZJ3|1|LI|A|3517
6ZJ3|1|LI|5MC|3518
6ZJ3|1|LI|C|3519
6ZJ3|1|LI|A|3520
6ZJ3|1|LI|A2M|3521
6ZJ3|1|LI|C|3522
6ZJ3|1|LI|A|3523
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain LW
- Ribosomal protein uL13
- Chain LY
- Ribosomal protein uL14
Coloring options: