J3_6ZM5_011
3D structure
- PDB id
- 6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- AGGA*UAC*GGAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZM5_011 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0962
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ZM5|1|AA|A|1198
6ZM5|1|AA|G|1199
6ZM5|1|AA|G|1200
6ZM5|1|AA|A|1201
*
6ZM5|1|AA|U|1364
6ZM5|1|AA|A|1365
6ZM5|1|AA|C|1366
*
6ZM5|1|AA|G|1421
6ZM5|1|AA|G|1422
6ZM5|1|AA|A|1423
6ZM5|1|AA|U|1424
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AF
- 28S ribosomal protein S7, mitochondrial
- Chain AG
- 28S ribosomal protein S9, mitochondrial
- Chain x
- Transfer RNA; tRNA
Coloring options: