J3_6ZME_008

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

6ZME|1|L5|U|2788, 6ZME|1|L5|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZME_008 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.0857

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6ZME|1|L5|G|2402
6ZME|1|L5|A|2403
6ZME|1|L5|A|2404
6ZME|1|L5|G|2405
*
6ZME|1|L5|C|2785
6ZME|1|L5|C|2786
6ZME|1|L5|A|2787
6ZME|1|L5|U|2788
6ZME|1|L5|A|2789
6ZME|1|L5|U|2790
6ZME|1|L5|C|2791
*
6ZME|1|L5|G|2800
6ZME|1|L5|U|2801
6ZME|1|L5|C|2802

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39