3D structure

PDB id
6ZME (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UG*CGACC*GA
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZME_011 not in the Motif Atlas
Homologous match to J3_8C3A_054
Geometric discrepancy: 0.2575
The information below is about J3_8C3A_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16991.1
Basepair signature
cWW-F-cWW-F-F-cWW
Number of instances in this motif group
3

Unit IDs

6ZME|1|L5|U|2575
6ZME|1|L5|G|2576
*
6ZME|1|L5|C|2585
6ZME|1|L5|G|2586
6ZME|1|L5|A|2587
6ZME|1|L5|C|2588
6ZME|1|L5|C|2589
*
6ZME|1|L5|G|2756
6ZME|1|L5|A|2757

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LZ
60S ribosomal protein L27
Chain Lg
60S ribosomal protein L34

Coloring options:


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