J3_6ZME_014

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6ZME|1|L5|A|4464, 6ZME|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZME_014 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0775

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6ZME|1|L5|U|4463
6ZME|1|L5|A|4464
6ZME|1|L5|U|4465
6ZME|1|L5|C|4466
*
6ZME|1|L5|G|4491
6ZME|1|L5|U|4492
6ZME|1|L5|U|4493
*
6ZME|1|L5|A|4507
6ZME|1|L5|C|4508
6ZME|1|L5|U|4509
6ZME|1|L5|A|4510
6ZME|1|L5|A|4511
6ZME|1|L5|U|4512
6ZME|1|L5|A|4513

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23