J3_6ZMO_014

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6ZMO|1|L5|A|4464, 6ZMO|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZMO_014 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0789

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6ZMO|1|L5|U|4463
6ZMO|1|L5|A|4464
6ZMO|1|L5|U|4465
6ZMO|1|L5|C|4466
*
6ZMO|1|L5|G|4491
6ZMO|1|L5|U|4492
6ZMO|1|L5|U|4493
*
6ZMO|1|L5|A|4507
6ZMO|1|L5|C|4508
6ZMO|1|L5|U|4509
6ZMO|1|L5|A|4510
6ZMO|1|L5|A|4511
6ZMO|1|L5|U|4512
6ZMO|1|L5|A|4513

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23