J3_6ZMO_023
3D structure
- PDB id
- 6ZMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZMO_023 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1233
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZMO|1|S2|C|1218
6ZMO|1|S2|C|1219
6ZMO|1|S2|A|1220
6ZMO|1|S2|G|1221
*
6ZMO|1|S2|C|1645
6ZMO|1|S2|C|1646
6ZMO|1|S2|A|1647
6ZMO|1|S2|G|1648
6ZMO|1|S2|U|1649
6ZMO|1|S2|A|1650
6ZMO|1|S2|A|1651
*
6ZMO|1|S2|U|1673
6ZMO|1|S2|G|1674
6ZMO|1|S2|A|1675
6ZMO|1|S2|U|1676
6ZMO|1|S2|U|1677
6ZMO|1|S2|A|1678
6ZMO|1|S2|A|1679
6ZMO|1|S2|G|1680
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain SR
- 40S ribosomal protein S17
- Chain Sc
- 40S ribosomal protein S28
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