J3_6ZMW_006
3D structure
- PDB id
- 6ZMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translational initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- C(JMH)AG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- 6ZMW|1|A|A|1679
- QA status
- Modified nucleotides: JMH, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZMW_006 not in the Motif Atlas
- Homologous match to J3_8P9A_076
- Geometric discrepancy: 0.1212
- The information below is about J3_8P9A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZMW|1|A|C|1218
6ZMW|1|A|JMH|1219
6ZMW|1|A|A|1220
6ZMW|1|A|G|1221
*
6ZMW|1|A|C|1645
6ZMW|1|A|C|1646
6ZMW|1|A|A|1647
6ZMW|1|A|G|1648
6ZMW|1|A|U|1649
6ZMW|1|A|A|1650
6ZMW|1|A|A|1651
*
6ZMW|1|A|U|1673
6ZMW|1|A|G|1674
6ZMW|1|A|A|1675
6ZMW|1|A|U|1676
6ZMW|1|A|U|1677
6ZMW|1|A|A2M|1678
6ZMW|1|A|A|1679
6ZMW|1|A|G|1680
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain V
- 40S ribosomal protein S5
- Chain Y
- 40S ribosomal protein S16
- Chain n
- 40S ribosomal protein S28
Coloring options: