J3_6ZMW_009
3D structure
- PDB id
- 6ZMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translational initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 6ZMW|1|A|G|1274, 6ZMW|1|A|G|1507, 6ZMW|1|A|U|1509
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZMW_009 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.2493
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6ZMW|1|A|C|1272
6ZMW|1|A|C|1273
6ZMW|1|A|G|1274
6ZMW|1|A|G|1275
6ZMW|1|A|A|1276
6ZMW|1|A|C|1277
*
6ZMW|1|A|G|1320
6ZMW|1|A|G|1321
6ZMW|1|A|G|1322
6ZMW|1|A|U|1323
6ZMW|1|A|G|1324
*
6ZMW|1|A|U|1504
6ZMW|1|A|U|1505
6ZMW|1|A|A|1506
6ZMW|1|A|G|1507
6ZMW|1|A|A|1508
6ZMW|1|A|U|1509
6ZMW|1|A|G|1510
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain a
- 40S ribosomal protein S10
- Chain i
- 40S ribosomal protein S29
- Chain k
- Ubiquitin-40S ribosomal protein S27a
- Chain q
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain z
- Eukaryotic translation initiation factor 3 subunit J
Coloring options: