J3_6ZN5_004

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6ZN5|1|2|C|1138, 6ZN5|1|2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZN5|1|2|C|1094
6ZN5|1|2|C|1095
6ZN5|1|2|G|1096
*
6ZN5|1|2|U|1136
6ZN5|1|2|U|1137
6ZN5|1|2|C|1138
6ZN5|1|2|C|1139
6ZN5|1|2|G|1140
*
6ZN5|1|2|C|1147
6ZN5|1|2|A|1148
6ZN5|1|2|A|1149
6ZN5|1|2|A|1150
6ZN5|1|2|G|1151

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein SA

Chain W

40S ribosomal protein S15a

Chain Z

40S ribosomal protein S21

Chain b

40S ribosomal protein S27

Chain c

40S ribosomal protein S26