J3_6ZN5_009
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZN5_009 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1234
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6ZN5|1|2|U|1340
6ZN5|1|2|C|1341
6ZN5|1|2|U|1342
6ZN5|1|2|U|1343
6ZN5|1|2|A|1344
6ZN5|1|2|G|1345
*
6ZN5|1|2|C|1384
6ZN5|1|2|G|1385
6ZN5|1|2|A|1386
6ZN5|1|2|G|1387
6ZN5|1|2|A|1388
6ZN5|1|2|C|1389
*
6ZN5|1|2|G|1481
6ZN5|1|2|C|1482
6ZN5|1|2|A|1483
6ZN5|1|2|A|1484
6ZN5|1|2|U|1485
6ZN5|1|2|A|1486
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain F
- 40S ribosomal protein S3
- Chain R
- 40S ribosomal protein S16
- Chain S
- 40S ribosomal protein S17
- Chain V
- 40S ribosomal protein S20
- Chain f
- 40S ribosomal protein S29
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