J3_6ZON_004

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6ZON|1|2|C|1138, 6ZON|1|2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|C|1094
6ZON|1|2|C|1095
6ZON|1|2|G|1096
*
6ZON|1|2|U|1136
6ZON|1|2|U|1137
6ZON|1|2|C|1138
6ZON|1|2|C|1139
6ZON|1|2|G|1140
*
6ZON|1|2|C|1147
6ZON|1|2|A|1148
6ZON|1|2|A|1149
6ZON|1|2|A|1150
6ZON|1|2|G|1151

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S26

Chain R

40S ribosomal protein S27

Chain a

40S ribosomal protein SA

Chain f

40S ribosomal protein S15a

Chain y

40S ribosomal protein S21