J3_6ZON_013

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6ZON|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZON_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0626

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZON|1|2|A|40
6ZON|1|2|G|41
6ZON|1|2|A|42
6ZON|1|2|U|43
6ZON|1|2|U|44
6ZON|1|2|A|45
6ZON|1|2|A|46
6ZON|1|2|G|47
*
6ZON|1|2|C|479
6ZON|1|2|G|480
6ZON|1|2|C|481
6ZON|1|2|G|482
6ZON|1|2|C|483
6ZON|1|2|A|484
6ZON|1|2|A|485
6ZON|1|2|A|486
6ZON|1|2|U|487
*
6ZON|1|2|A|512
6ZON|1|2|G|513
6ZON|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S9

Chain j

40S ribosomal protein S23